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Biotecnia

Online version ISSN 1665-1456

Biotecnia  vol. 27
https://doi.org/10.18633/biotecnia.v27.2528

Artículos

Population dynamics of Naegleria fowleri genotype 2 in natural aquatic environments in Sonora, Mexico, throughout the year

Dinámica poblacional del genotipo 2 de Naegleria fowleri en ambientes acuáticos naturales de Sonora, México, a lo largo del año

Article Indicators
Lares-Jiménez, Luis Fernando1
http://orcid.org/0000-0002-8314-7512
Rodríguez-Anaya, Libia Zulema2
http://orcid.org/0000-0003-1643-3938
Alfaro-Sifuentes, Rosalía3
http://orcid.org/0000-0002-5366-7402
Gonzalez-Galaviz, José Reyes2
http://orcid.org/0000-0001-7235-9328
Borquez-Román, Manuel Alejandro3
http://orcid.org/0009-0009-0111-0387
Otero-Ruiz, Alejandro3
http://orcid.org/0000-0002-8793-7204
González-Peraza, Fernando4

Ibarra-Gámez, José Cuauhtémoc1
http://orcid.org/0000-0001-5601-7598
Casillas-Hernández, Ramón1
http://orcid.org/0000-0003-1977-5298
Lares-Villa, Fernando13*
http://orcid.org/0009-0001-1576-6098
Author affiliation
×
  • 1Departamento de Ciencias Agronómicas y Veterinarias. Instituto Tecnológico de Sonora. luis.lares@itson.edu.mx manuel-177@hotmail.com jose.ibarra@itson.edu.mx rcasillas@itson.edu.mx
  • 2SECIHTI-ITSON. libia.rodriguez@conacyt.mx jose.gonzalez@itson.edu.mx
  • 3Programa de Maestría en Ciencias en Recursos Naturales. Instituto Tecnológico de Sonora. sifuentes.ra5@gmail.com alexgobi2@hotmail.com
  • 4Laboratorio de Diagnóstico Integral de Patología Animal. Instituto Tecnológico de Sonora, 5 de Febrero 818 Sur, Colonia Centro CP 85000, Ciudad Obregón, Sonora, México.
Author notes
*Author for correspondence: Fernando Lares-Villa e-mail: flares@itson.edu.mx
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Abstract

We carried out monthly samplings to determine the concentration of Naegleria fowleri in four natural water bodies of the Yaqui Valley, Sonora, Mexico. We measured the temperature, dissolved oxygen, and pH of the water. The water samples were shaken and processed to determine the concentration using the most probable number (MPN) method and seeded on non-nutritive agar plates with Escherichia coli. Each amoeba detected was isolated in a new plate to continue with the identification. MPN tables were used for the amoeba count, and the identity of the genus Naegleria and N. fowleri was used using specific primers and end-point PCR. We identified N. fowleri in all four water bodies during the summer and fall seasons, with 70 MPN L-1 as the highest concentration. We selected seven N. fowleri strains for sequencing and genotyping; all belonged to type 2. Through the results, we can affirm that the variations in the number of N. fowleri recorded throughout the year at the different sites studied are influenced by different biotic or abiotic factors, in addition to temperature, dissolved oxygen, and pH determined in this study. This makes it difficult to predict their presence in natural aquatic environments with relatively low populations.

Keywords::
Naegleria, free-living amoebae, environmental distribution, primary amoebic meningoencephalitis, meningitis, thermophilic, N. fowleri genotype 2

Introduction

Naegleria fowleri received a new species status in 1970 due to its pathogenicity in humans (De Jonckheere, 2011). This free-living amoeba, also known as “the brain-eating amoeba” (Ruszkiewicz et al., 2019), is the causative agent of primary amoebic meningoencephalitis (PAM), an acute and usually fatal disease (Gompf and Garcia, 2019). PAM occurs primarily in children and adolescents with a history of swimming or diving in various aquatic environments. N. fowleri can reach the central nervous system (CNS) through water entering the nose (Cope et al., 2019). Using devices for washing the nose for medical or religious reasons with water contaminated with N. fowleri has been the cause of several deaths from PAM in adults (Yoder et al., 2012). This pathogen is a thermophilic ameboflagellate isolated worldwide from freshwater lakes, ponds, rivers, hot springs, thermally polluted water, warm groundwater, inadequately treated swimming pools, sewage, in biofilms of drinking water distribution systems, and soil, where it lives by feeding on bacteria and other microbes in the environment. It tolerates temperatures of up to 45 °C and thrives during warmer months when the ambient temperature increases. Naegleria is not found in salt water, like the sea (Morgan et al., 2016; Puzon et al., 2017; CDC, 2024).

Most of the current work is focused on N. fowleri in artificial environments, such as drinking water distribution systems rather than natural environments, reporting presence and absence data and how to reduce its presence (Miller et al., 2017; Miller et al., 2018). Several studies have also focused on improving isolation, culture, and identification procedures by molecular methods, including quantitative determinations of N. fowleri from different environments, and how biotic and abiotic factors could explain its presence and distribution (Puzon et al., 2009; Streby et al., 2015; Miller et al., 2015; Moussa et al., 2020).

The current study involved a seasonal search of N. fowleri in three natural surface bodies of water and one thermal spring from Yaqui Valley, the cradle of the green revolution, in northwestern Mexico. The objective was to determine the number and distribution of amoebas, and assess whether the presence of N. fowleri correlates with seasonal factors or other environmental factors and which type of N. fowleri predominates in this region of the eight genotypes recorded worldwide (De Jonckheere, 2011). It is still unclear how often N. fowleri is present in natural surface waters and at what concentration its presence becomes a human health hazard.

Material and methods

Sampling sites

In the study, we included four natural water bodies with recreational activities. La Isleta (27°45’21.46’’ N, 109°54’04.79’’ O), a lagoon called Las Palmas (27°43’58.42’’ N, 109°52’28.56’’ O), a thermal spring called Aguacaliente (27°43’54.87’’ N, 109°50’12.69’’ O) and, the Laguna del Náinari (27°29’42.73’’ N, 109°58’02.81’’ O). The climate in the area is sweltering, with an average annual precipitation of 410 mm (INAFED, 2020).

Sampling

Samples were taken monthly from each site from May 2017 to April 2018. The sampling point was previously established, referring to the presence of organic matter and inert matter as support. Once we selected the sampling spot, rubbed and mixed the waters, we removed any amoeba adhering to the substrate, and we collected 1 L per site in sterile containers. Likewise, the temperature of the water and the environment were measured in situ with a BRANNAN mercury thermometer, dissolved oxygen with a YSI oximeter, salinity with a VITAL SINE refractometer and, in the laboratory, the pH with a potentiometer HANNA (Pernin et al., 1998; Lares-Villa and Hernández-Peña, 2010). We performed all statistical analyses using the STATGRAPHICS Plus software (version 5.1, Statistical Graphics Corp., USA).

Culture on non-nutritive agar with Escherichia coli (NNE)

Bacteriological agar MCD-LAB at 5% was prepared, heated until complete dissolution, and autoclaved at 121 °C for 15 minutes. We then emptied the medium into disposable KLINICUS Petri dishes. After solidifying, we applied 200 µL of live E. coli suspension to each plate and spread it with a Drigalski spatula.

Sample processing to determine the most probable number (MPN)

After stirring to homogenize, we filtered the water samples through 1.2 µm Merck Millipore cellulose membranes using the Micro Filtration Systems filter kit, where five volumes of 100 mL and five volumes of 10 mL were filtered separately (Pernin et al., 1998; Lares-Villa and Hernández-Peña, 2010; Blodgett, 2024). We cut the filters in half and placed them inverted on the same NNE plate to allow amoebae to exit quickly after incubation. Likewise, we planted directly in NNE plates in quintuplicate, 1 and 0.1 mL per sample, leaving them at rest for 20 minutes before incubating the Petri dishes with inverted NNE and in plastic bags to prevent them from drying out. We obtained 80 plaques per month from the four sites and incubated them at 45 °C. The reason for planting four volumes of water samples, 100, 10, 1, and 0.1 mL, is that we did not know the number of amoebae that could exist in the different bodies of water (Pernin et al., 1998; Lares-Villa and Hernández-Peña, 2010).

Isolation and counting of thermophilic amoebae

We examined each culture daily under an inverted Axiovert 135 ZEISS microscope (Carl Zeiss, Gottingen, Germany) for five days and registered the amoebae presence or absence from each NNE plate. After we compared the results with NMP tables to determine the MPN of amoebae per liter from each sampling site, the MPN/L obtained by filtration had a correction multiplied by two, due to loss of amoebae with this concentration method. All plates that did not show growth after five days were considered negative. We collected each amoeba growth that emerged along the two halves of the filter for isolation and subculture. Similarly, each amoeba “colony” was grown separately on seeded plates with 1 and 0.1 mL of the water sample, and transferred to a new NNE plate to prevent further cloning of the amoeba. For this last part, the first observation was before 24 hours of incubation. For counting thermophilic amoebae (TA), only the positive or negative growth of each seeded plate and the corresponding dilution registered were compared with MPN tables to obtain the final count (Pernin et al., 1998; Lares-Villa and Hernández-Peña, 2010; Blodgett, 2024).

Flagellation test

All those strains that showed morphological characteristics suspected of belonging to the genus Naegleria underwent the flagellation test. This test consisted of adding 2 mL of sterile distilled water to each plate and incubating at 37 °C for four hours. Then, we examined each dish by inverted microscopy at two, three, and four hours, and in the presence of flagellated bodies, 0.1 mL of the liquid was transferred to a new plate with NNE to incubate again for 24 h at 45 °C and prepare them for DNA extraction (De Jonckheere, 1977).

DNA extraction

Once the pure cultures were obtained and had sufficient growth, we collected the amoebae for DNA extraction using the commercial kit DNeasy® Blood and Tissue Kit (Qiagen), according to the manufacturer’s instructions. Subsequently, we verified its integrity by electrophoresis in 1% agarose gel, stained with ethidium bromide, at 50 V for one hour. Finally, we quantify DNA using a NanoDrop 2000c spectrophotometer (Zysset-Burri et al., 2014).

PCR endpoint and counting of thermophilic Naegleria (TN) and Naegleria fowleri (Nf)

We performed PCR amplification according to the manufacturer’s instructions using the GoTaq Flexi DNA Polymerase Kit (Promega). Primers ITS1 5’-GAACCTGCGTAGGGATCATTT-3’ and ITS2 5’-TTTCTTTTCCTCCCCTTATTA-3’ were used for the identification of the genus Naegleria and for the confirmation of N. fowleri the primers used were FW1 5’-GTGAAAACCTTTTTTCCATTTACA-3‘, RV1 5’-AAATAAAAGATTGACCATTTGAAA-3’, with an expected amplicon length of 410 bp and 310 bp respectively (Zhang et al., 2018). The thermal cycler conditions were as follows: initial denaturation of 94 °C for 3 minutes, followed by 30 cycles of 94 °C for 30 s, 55 °C for 30 s, 72 °C for 30 s, and a final extension at 72 °C for 5 min. Then, we visualized the PCR products in a UV transilluminator at a wavelength of 260 nm after electrophoretic separation in a 2% agarose gel stained with ethidium bromide (Panda et al., 2015). From the thermophilic isolates positive to Naegleria genus and N. fowleri, through PCR test, the number of plates where they grew, of each dilution, was registered to obtain the MPN of thermophilic Naegleria, and the MPN of N. fowleri per liter (Lares-Villa and Hernández-Peña, 2010; Blodgett, 2024).

Sanger sequencing and bioinformatic analysis to identify genotypes

For strains confirmed as N. fowleri, the ITS1, 5.8S, and ITS2 regions were amplified with the ITS primers. Using the Sanger technique, we purified and sequenced the PCR products in both directions. Subsequently, we edited the sequences, aligned them, and analyzed them with the CLC Genomics Workbench v.20 programs (https://digitalinsights.qiagen.com/) for genotype characterization. We used the representative sequences for each genotype deposited in the GenBank in comparing alignments: AY376149, X96564, X96562, AJ132030, AJ132028, FR875287, X96563 and FR875288 (Zhang et al., 2018).

Results and discussion

Sampling sites

Except for Aguacaliente, which is a source of thermal water, the water from the other study sites, La Isleta (where water flows continuously through a canal), Las Palmas (a natural lake), and Laguna del Nainari (an artificial lake), is supplied by water from the Alvaro Obregon dam. It is important to note that in certain areas and times of the year, this water is supplemented with groundwater to meet the specific agricultural needs of the region. While the water in the Yaqui Valley is predominantly used for irrigation, the four sites we investigated are also popular recreational spots for families, offering opportunities for picnics and swimming. However, if N. fowleri is present, the water could be a source of significant health risks. This underscores the gravity of the situation and the importance of our study’s findings for public health.

MPN of thermophilic amoebae (TA)

The data in Table 1 reveal that thermophilic amoebae were present throughout the year. The term ‘thermophilic’ is used for organisms that grow above 40 °C, according to De Jonckheere (2002). In our study, we focused on the growth of N. fowleri, selecting 45 °C as the main isolation temperature to eliminate organisms that cannot grow at this temperature. The data in Table 1 reveal the intriguing complexity of our findings, with thermophilic amoebae being present throughout the year. Still, their figures vary significantly depending on the month and sampling site, ranging from 4 NMP TA/L to 2398 NMP TA/L.

Table 1
The most probable number of thermophilic amoebae (TA) from La Isleta, Las Palmas, Aguacaliente, and Laguna del Nainari in 2017-2018.
Tabla 1.
Número más probable de amibas termófilas (TA) de La Isleta, Las Palmas, Aguacaliente y Laguna del Náinari en 2017-2018.
MPN of thermophilic amoebae
Sampling La Isleta Las Palmas Aguacaliente Laguna del Nainari
MPN TA/L MPN TA/L MPN TA/L MPN TA/L
01/05/2017 788 (± 458) 1724 (± 860) 2398 (± 1209) 1299 (± 669)
20/06/2017 1299 (± 669) 14* (± 4) 201 (± 200) 10* (± 3)
10/07/2017 788 (± 458) 48* (± 12) 2398 (± 1209) 8* (± 3)
14/08/2017 201 (± 200) 201 (± 200) 22* (± 6) 10* (± 3)
13/09/2017 <200 70* (± 19) 70* (± 19) 201 (± 200)
18/10/2017 184* (± 54) 322* (± 89) 184* (± 54) 4* (± 2)
15/11/2017 452 (± 319) 322* (± 89) 201 (± 200) 108* (± 33)
11/12/2017 452 (± 319) <200 1299 (± 669) 16* (± 5)
15/01/2018 108* (± 33) 10* (± 3) 184* (± 54) 10* (± 3)
12/02/2018 26* (± 7) 18* (± 5) <200 4* (± 2)
12/03/2018 26* (± 7) 14* (± 4) 184* (± 54) 48* (± 12)
16/04/2018 322* (± 89) 10* (± 3) 322* (± 89) 28* (± 7)
- Not detected; *Corrected number; ( ) Standard deviation organisms /L.

Table 1 presents a clear pattern: Aguacaliente consistently recorded the highest TA concentrations, a trend directly linked to favorable climatic conditions. These conditions, characterized by temperatures above 40 °C, provide an ideal environment for the growth of microorganisms. Among the thermophilic or thermotolerant amoebas reported in Aguacaliente in previous studies are the genera Naegleria, Acanthamoeba, Balamuthia, Vermamoeba, and Stenamoeba (Lares-Jiménez et al., 2018).

MPN of thermophilic Naegleria spp.

Table 2 clearly shows the differences between the studied water bodies. In Aguacaliente hot springs, the genus Naegleria was present throughout the sampling year. Compared to the Pearson analysis, we did not observe a correlation between climatic parameters and the presence of Naegleria spp. The number of Naegleria spp. identified by flagellar transformation and confirmed by PCR varied between 4 NMP/L and 788 NMP/L in the different sites sampled, with La Isleta, Las Palmas, and Laguna del Nainari having the lowest densities and frequencies of monthly isolates compared with Aguacaliente. Of the 47 species of Naegleria described worldwide by different methods, including molecular ones, 20 species grow between 40 and 45 or more degrees Celsius, but mainly only seven species grow at 45 °C (Guzmán-Fierros et al., 2008). Of the few genetic studies on Naegleria spp. conducted in different bodies of water in this region, including the four sites of this study, only the presence of thermophilic N. fowleri, N. thiangensis, and N. lovaniensis has been reported. The latter is the most abundant thermophilic Naegleria species (Guzmán-Fierros et al., 2008; Lares-Villa and Hernández-Peña, 2010; Lares-Jiménez et al., 2018).

Table 2
The most probable number of thermophilic Naegleria (TN) from La Isleta, Las Palmas, Aguacaliente, and Laguna del Nainari in 2017-2018.
Tabla 2.
Número más probable de Naegleria termófilas (TN) de La Isleta, Las Palmas, Aguacaliente y Laguna del Náinari en 2017-2018.
MPN of thermophilic Naegleria
Sampling La Isleta Las Palmas Aguacaliente Laguna del Nainari
MPN TN/L MPN TN/L MPN TN/L MPN TN/L
01/05/2017 - 4* (± 2) 322* (± 89) -
20/06/2017 - - 201 (± 200) -
10/07/2017 22* (± 6) 4* (± 2) 788 (± 458) -
14/08/2017 4* (± 2) 70* (± 19) 10* (± 3) -
13/09/2017 4* (± 2) 16* (± 5) 34* (± 9) 70* (± 19)
18/10/2017 - 10* (± 3) 184* (± 54) -
15/11/2017 4* (± 2) 4* (± 2) 34* (± 9) 4* (± 2)
11/12/2017 - 16* (± 5) 201 (± 200) -
15/01/2018 - - 184* (± 54) -
12/02/2018 - - 8* (± 3) -
12/03/2018 - - 34* (± 9) -
16/04/2018 - - 22* (± 6) -
- Not detected; *Corrected number; ( ) Standard deviation organisms /L.

MPN of Naegleria fowleri

The results shown in Table 3 confirm the presence of N. fowleri in all four study sites and establish a connection with the findings of Lares-Villa and Hernández Peña (2010). The levels of N. fowleri varied depending on the month and location of sampling, ranging between 4 NMP Nf/L and 70 NMP Nf/L. Notably, N. fowleri was detected during August, September, and October, which aligns with the months reported in the study mentioned above and with data ranging from 4 to 18 NMP Nf/L. This correlation enhances the reliability of our research and contributes to the existing knowledge about N. fowleri in natural water bodies.

Table 3
The most probable number of N. fowleri (Nf) from La Isleta, Las Palmas, Aguacaliente, and Laguna del Nainari in 2017-2018.
Tabla 3.
Número más probable de N. fowleri (Nf) de La Isleta, Las Palmas, Aguacaliente y Laguna del Náinari en 2017-2018.
MPN of Naegleria fowleri
Sampling La Isleta Las Palmas Aguacaliente Laguna del Nainari
MPN Nf/L MPN Nf/L MPN Nf/L MPN Nf/L
01/05/2017 - - - -
20/06/2017 - - - -
10/07/2017 - - - -
14/08/2017 - 22* (± 6) - -
13/09/2017 4* (± 2) 16* (± 5) - 70* (± 19)
18/10/2017 - - 18* (± 5) -
15/11/2017 - - - -
11/12/2017 - - - -
15/01/2018 - - - -
12/02/2018 - - - -
12/03/2018 - - - -
16/04/2018 - - - -
- Not detected; *Corrected number; ( ) Standard deviation organisms /L.

This report marks the first documented presence of N. fowleri in Laguna del Nainari and Aguacaliente. Our findings suggest that the lagoon’s connection to La Isleta, which supplies its water, may have facilitated the amoeba’s presence in September. Similarly, the onset of the rainy season in October could have introduced the pathogenic amoeba into the thermal water source in Aguacaliente, challenging the notion that temperatures above 40 °C alone are responsible (Stahl and Olson, 2021).

Table 4 presents the results of identifying free-living amoebae, which were isolated and grown at the precise temperature of 45 °C at the four specific sampling points under study. Our research involved a meticulously designed and executed process of isolation and identification of a total of 655 thermophilic AVL strains. Among these, 260 showed flagellated bodies. Through PCR analysis, we identified 238 as Naegleria spp. and 22 as N. fowleri, providing a comprehensive and reliable understanding of the presence of these strains in the studied areas. It was found that 91.5% of amoeboid organisms with flagella tested positive in the endpoint PCR for Naegleria species. This suggests that another genus with flagellated organisms in its life cycle was identified in the study, potentially including different amoebae belonging to the Heterolobosea class (Page, 1988; Robinson et al., 1989). The isolation of N. fowleri, representing approximately 10% of the isolates, is a significant finding. However, when we compare it with the total thermophilic AVL, the number of N. fowleri would barely represent approximately 3.4%. This means that N. fowleri, the only strain of Naegleria pathogenic for humans reported so far, is found in meager proportions in natural environments.

Table 4
Free-living amoebae isolated and grown at 45 °C, from La Isleta, Las Palmas, Aguacaliente, and Laguna del Nainari, Sonora, from May 2017 to April 2018.
Tabla 4.
Amibas de vida libre aisladas y cultivadas a 45 °C, de La Isleta, Las Palmas, Aguacaliente y Laguna del Náinari, Sonora, de mayo de 2017 a abril de 2018..
Free living amoebae La Isleta Las Palmas Aguacaliente Laguna del Náinari Total
Thermophilic amoebae 273 104 225 53 655
Positive flagellation test 16 36 198 10 260
Thermophilic Naegleria spp. 8 29 192 9 238
Naegleria fowleri 1 10 4 7 22

Regarding the strains positive for N. fowleri, they represent only 9.2% of Naegleria spp. It has been found that there is a more significant proliferation of other species, such as N. lovaniensis, which has been previously demonstrated (Guzmán-Fierros et al., 2008; Lares-Jiménez et al., 2018), in addition to the fact that the pathogen represents only 3.4% of the total, results that agree with those obtained by Lares-Villa and Hernández-Peña (2010), where N. fowleri only represented 1.8% of the total isolated thermophilic amoebas. This reiteration of the agreement of our results with previous studies should instill confidence in the scientific community. Although none of the sites reported levels of N. fowleri greater than 100 MPN L-1, a value established by Cabanes et al. (2001), where they mention that values higher than this number mean a risk of infection for the population, or if the standard applied by the Australian government were taken as a reference, which implies two thermophilic Naegleria per liter (De Jonckheere, 2014), it is must prevent the population from accessing all the sampling locations studied, particularly during August, September and October.

Genotyping of Naegleria fowleri

Once the nucleotide sequences were obtained, assembled, edited, aligned, and analyzed with the CLC Genomics program for genotype characterization, we found that the seven N. fowleri strains belong to type 2, which have a length of 42 bp in their ITS1 (Figure 1) and nucleotide T at position 31 in its 5.8S rDNA (Figure 2). As described by De Jonckheere (2011), there are eight genotypes distributed around the world that have been characterized based on the number of repetitions in the ITS1 region, which can vary in size depending on the characteristics of each genotype, having a range of 42-142 bp and a C / T transition at position 31 in the 5.8S region. The ITS2 region is identical among all N. fowleri strains and, therefore, is not analyzed in these characterizations (De Jonckheere, 2004). Based on this and the analysis carried out in this work, it was observed that the seven N. fowleri strains belong to type 2, which have a length of 42 bp in their ITS1 (Figure 1) and nucleotide T at position 31 in its 5.8S rDNA (Figure 2). The discovery of type 2 in the Yaqui Valley aligns with the findings of De Jonckheere (2011), who reported that type 1, 2, and 3 genotypes have been found in America. Additionally, Vargas-Zepeda et al. (2005) conducted a molecular analysis of N. fowleri isolated from a CSF sample in Sonora and identified type 2. This suggests the need to expand the analysis in Mexico to confirm the prevalence of genotype 2 in both the region and the country. Genotype 2 has been found in environmental samples as well as in clinical cases (Pelandakis et al., 2000; Zhou et al., 2003; Cogo et al., 2004; Nicolas et al., 2010). In Taiwan, the first case of PAM was reported in November 2011, and subsequent sampling of recreational hot springs visited by the patient revealed the presence of N. fowleri type 2, which matched the type found in the patient. This molecular characterization method was used as an epidemiological tracing tool (Tung et al., 2013). More recently, Zhang et al. (2018) conducted a molecular typing study of this amoeba from a patient’s sample in the Zhejiang province of China and once again found type 2.

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Figure 1
Alignment of the ITS1 regions of Naegleria fowleri. DNA sequence alignments were performed using QIAGEN CLC Genomics Workbench 21.0. The length of the ITS1 region and the base at position 31 of the 5.8S rRNA sequences, were compared using genotypes 1-8 deposited in the National Center for Biotechnology Information (NCBI) database.
Thumbnail
Alineación de las regiones ITS1 de Naegleria fowleri. Las alineaciones de secuencias de ADN se realizaron utilizando QIAGEN CLC Genomics Workbench 21.0. La longitud de la región ITS1 y la base en la posición 31 de las secuencias de ARNr 5.8S se compararon utilizando los genotipos 1 a 8 depositados en la base de datos del Centro Nacional de Información Biotecnológica (NCBI).
Figura 1.
Alineación de las regiones ITS1 de Naegleria fowleri. Las alineaciones de secuencias de ADN se realizaron utilizando QIAGEN CLC Genomics Workbench 21.0. La longitud de la región ITS1 y la base en la posición 31 de las secuencias de ARNr 5.8S se compararon utilizando los genotipos 1 a 8 depositados en la base de datos del Centro Nacional de Información Biotecnológica (NCBI).
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Figure 2
Alignment of the 5.8S region (145 bp) showing the C / T transition at position 31.
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Alineación de la región 5.8S (145 pb) que muestra la transición C/T en la posición 31.
Figura 2.
Alineación de la región 5.8S (145 pb) que muestra la transición C/T en la posición 31.

Water temperature, environmental temperature, pH, and dissolved oxygen at the sampling sites

Figures 3-6 show the mean and standard deviation of the monthly measured parameters (water temperature, ambient temperature, pH, and dissolved oxygen) grouped by seasons of the year and sampling sites. In general, samples collected during the winter (December to February) had the lowest average water and ambient temperatures, while the highest temperatures were obtained in the summer (June to August), showing significant differences in both seasons. Therefore, values with the same letter are statistically equal (p≤ 0.05) (Figures 3 and 4).

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Figure 3
Annual behavior of water temperature at sampling sites.
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Comportamiento anual de la temperatura del agua en los sitios de muestreo. Values with the same letter are statistically the same (p≤ 0.05)
Figura 3.
Comportamiento anual de la temperatura del agua en los sitios de muestreo.
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Figure 4
Annual behavior of environmental temperature at sampling sites.
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Comportamiento anual de la temperatura ambiental en los sitios de muestreo. Values with the same letter are statistically the same (p≤ 0.05)
Figura 4.
Comportamiento anual de la temperatura ambiental en los sitios de muestreo.
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Figure 5
Annual water pH behavior at sampling sites.
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Comportamiento anual del pH del agua en los sitios de muestreo. Values with the same letter are statistically the same (p≤ 0.05)
Figura 5.
Comportamiento anual del pH del agua en los sitios de muestreo.
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Figure 6
Annual behavior of dissolved oxygen at sampling sites.
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Comportamiento anual del oxígeno disuelto en los sitios de muestreo. Values with the same letter are statistically the same (p≤ 0.05)
Figura 6.
Comportamiento anual del oxígeno disuelto en los sitios de muestreo.

In the case of water temperatures, the effect of the different seasons of the year is observed in the three reservoirs of natural water coming from the dam, and this is not the case in Aguacaliente, which is a source of natural thermal water (Figure 3). At this site, the water temperature was above 40 °C all year round. Although slight variations in environmental temperature are observed in the four sampling sites, we can practically observe two climates, summer and autumn, with the highest temperatures, and winter and spring, with the lowest temperatures (Figure 4). As seen in Table 1, the thermal body of Aguacaliente presented the highest concentrations of thermophilic amoebas throughout the year, a situation attributed to the primary favorable climatic condition for the growth of this type of microorganisms, which is water temperatures above 40 °C throughout the year. When performing the Pearson analysis, we did not observe a correlation between the behaviors of the number of thermophilic amoebae and the presented climatic conditions.

The pH averages obtained were similar at the four sampling sites throughout the year, except for La Isleta, which showed a statistically significant decrease in the spring with a pH R-value of -0.9020. This decrease in pH was particular because the waters of La Isleta, Las Palmas, and the Nainari Lagoon are interconnected, and the pH of the water did not vary significantly. The decrease in pH was probably due to the discharge of some contaminant into the water flow from upstream on the day of sampling. Regarding dissolved oxygen, except in Aguacaliente, the other sites showed significant differences, mainly between the autumn and winter seasons. In the Pearson analysis carried out to observe correlations between the variables, it was shown that there is a statistically significant relationship between the water temperature and the ambient temperature for La Isleta, Las Palmas and Laguna del Náinari, with an R value of 0.9563, 0.9711 and 0.9647, respectively. In addition, in the case of the Laguna del Náinari, a significant relationship was found between dissolved oxygen and water temperature, as well as statistically significant for environmental temperature, with an R-value of -0.9170 and -0.9717, respectively. On the other hand, for Las Palmas, only a meaningful relationship was presented, with an R-value of -0.9226 between dissolved oxygen and environmental temperature.

According to Marín-Galvín (2019), dissolved oxygen is a very relevant gas in the dynamics of water, where its solubility is a function of several factors: temperature, pressure, coefficient of solubility, vapor pressure, salinity, and physicochemical composition of water. In this way, we can see that the amount of dissolved oxygen varies inversely proportional to temperature, results that have already been observed in various studies. This is associated with the fact that at higher temperatures, aquatic organisms require more oxygen, which tends to decrease (Rosenfeld, 2017). Although the effect of some abiotic factors remains inconclusive for the presence of N. fowleri in natural surface waters, including the increase in water temperature due to climate change (Navarro-Estupiñan et al., 2018), it is necessary to continue studying not only abiotic factors, but also biotic and nutritional factors to know whether or not these determine the increase or control of the population of this pathogenic amoeba (Stahl and Olson, 2021).

Conclusions

Having determined the presence of this pathogen in the four sites studied demonstrates its wide ecological diversity because each of them shows different characteristics, and they also have great distances between them, so it would be interesting to focus future studies on the transport routes that can influence the movement of this pathogen, together with implementing greater parameters that allow a better understanding of the behavior of the species. Likewise, it is suggested that the four sites continue to be monitored because, with the current climate change and environmental contamination, the population densities of this pathogen may increase, posing a great risk of infection for those who visit these sites. Specifically, constant monitoring of the Laguna del Náinari is suggested since it was the site that showed the highest concentration and is located within the city, in addition to its supply being made through the low channel to which the population has access and is used to irrigate crops, generating contamination risks in nearby towns.

Conflicts of interest

The authors declare no conflict of interest.

Acknowledgments

Thanks to Bernardo Baldenea-Vega, Jesús-Andrea Campas-Aguirre, Rebeca Estefanya Payán-Sánchez and Leobardo-Daniel González-Zúñiga for their technical support. This work was funded by Coordinación de gestión y apoyo a cuerpos académicos del Instituto Tecnológico de Sonora (Project PROFAPI 2023_CA_019 RCH).

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Population dynamics of Naegleria fowleri genotype 2 in natural aquatic environments in Sonora, Mexico, throughout the year
  • Biotecnia  vol. 27Population dynamics of Naegleria fowleri genotype 2 in natural aquatic environments in Sonora, Mexico, throughout the year 0000-0002-8314-7512 Lares-Jiménez Luis Fernando 1 0000-0003-1643-3938 Rodríguez-Anaya Libia Zulema 2 0000-0002-5366-7402 Alfaro-Sifuentes Rosalía 3 0000-0001-7235-9328 Gonzalez-Galaviz José Reyes 2 0009-0009-0111-0387 Borquez-Román Manuel Alejandro 3 0000-0002-8793-7204 Otero-Ruiz Alejandro 3 González-Peraza Fernando 4 0000-0001-5601-7598 Ibarra-Gámez José Cuauhtémoc 1 0000-0003-1977-5298 Casillas-Hernández Ramón 1 0009-0001-1576-6098 Lares-Villa Fernando 1 3 * Author affiliationPermissions
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