<?xml version="1.0" encoding="ISO-8859-1"?><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<front>
<journal-meta>
<journal-id>2007-4298</journal-id>
<journal-title><![CDATA[Botanical Sciences]]></journal-title>
<abbrev-journal-title><![CDATA[Bot. sci]]></abbrev-journal-title>
<issn>2007-4298</issn>
<publisher>
<publisher-name><![CDATA[Sociedad Botánica de México A.C.]]></publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id>S2007-42982025000500113</article-id>
<article-id pub-id-type="doi">10.17129/botsci.3688</article-id>
<title-group>
<article-title xml:lang="en"><![CDATA[Divergence within diversity in the endemic, long-lived conifer Pinus greggii from the Sierra Madre Oriental, Mexico]]></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Aguirre-Dugua]]></surname>
<given-names><![CDATA[Xitlali]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
<xref ref-type="aff" rid="Aaf"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Gernandt]]></surname>
<given-names><![CDATA[David S.]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Moreno-Letelier]]></surname>
<given-names><![CDATA[Alejandra]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
</contrib-group>
<aff id="Af1">
<institution><![CDATA[,Universidad Nacional Autónoma de México Instituto de Biología Departamento de Botánica]]></institution>
<addr-line><![CDATA[ Mexico City]]></addr-line>
<country>México</country>
</aff>
<aff id="Af2">
<institution><![CDATA[,aff2  ]]></institution>
<addr-line><![CDATA[ Mexico City]]></addr-line>
<country>México</country>
</aff>
<aff id="Af3">
<institution><![CDATA[,Universidad Nacional Autónoma de México Instituto de Biología Jardín Botánico]]></institution>
<addr-line><![CDATA[ Mexico City]]></addr-line>
<country>México</country>
</aff>
<pub-date pub-type="pub">
<day>00</day>
<month>00</month>
<year>2025</year>
</pub-date>
<pub-date pub-type="epub">
<day>00</day>
<month>00</month>
<year>2025</year>
</pub-date>
<volume>103</volume>
<numero>spe</numero>
<fpage>113</fpage>
<lpage>131</lpage>
<copyright-statement/>
<copyright-year/>
<self-uri xlink:href="http://www.scielo.org.mx/scielo.php?script=sci_arttext&amp;pid=S2007-42982025000500113&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.mx/scielo.php?script=sci_abstract&amp;pid=S2007-42982025000500113&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.mx/scielo.php?script=sci_pdf&amp;pid=S2007-42982025000500113&amp;lng=en&amp;nrm=iso"></self-uri><abstract abstract-type="short" xml:lang="en"><p><![CDATA[Abstract  Background:  Mexico&#8217;s physiography has been recognized as a driver of Pinus diversification. This study analyzes phylogeographical patterns of the two varieties of P. greggii to cast light on genomic differentiation in allopatry.  Questions: What is the role of geographic barriers in the diversification and genomic differentiation of a highland conifer?  Studied species: Pinus greggii Engelm. ex Parl.  Study site and dates: Sierra Madre Oriental, Mexico, 2015-2017.  Methods: We used 481 nuclear SNPs and 73 non-coding plastome regions to evaluate genetic diversity and structure. Population relationships and demography were estimated using maximum likelihood and coalescent methods under an isolation with migration model and interpreted considering ecological niche modeling under present, Last Glacial Maximum and Last Interglacial conditions.  Results:  Admixture analyses based on nuclear data show that there are two region-specific clusters and one shared cluster, and that 47 % of SNPs are shared between varieties. Our data support a fragmentation event at the onset of the Last Interglacial (126k-148ky BP), resulting in a smaller effective population size in the south. Cryptic breaks, and ecological niche models agree with secondary contact during glacial periods. Divergence has been accompanied by population equilibrium as shown by non-significant Tajima&#8217;s D in plastome sequences.  Conclusions: Our results support that lineage divergence in Pinus is accompanied by the accumulation of genome-wide differences, while gene flow produced asymmetrical patterns of allele sharing. Our study highlights the effectiveness of mountain-valley systems in isolating populations and points to the need to establish conservation measures for southern P. greggii populations.]]></p></abstract>
<abstract abstract-type="short" xml:lang="es"><p><![CDATA[Resumen  Antecedentes: México tiene una fisiografía compleja reconocida como motor de diversificación del género Pinus. Este estudio analiza los patrones filogeográficos de dos variedades de P. greggii para entender su diferenciación genómica en alopatría.  Preguntas: ¿Qué papel juegan las barreras geográficas en la diversificación y diferenciación genómica de una especie de montaña?  Especies de estudio: Pinus greggii Engelm. ex Parl.  Sitio y años de estudio: Sierra Madre Oriental, 2015-2017.  Métodos: Usamos 481 SNPs nucleares y 73 regiones no codificantes del plastoma para evaluar la diversidad y estructura genética. Se estimaron relaciones entre poblaciones y parámetros demográficos usando máxima verosimilitud y coalescencia bajo aislamiento con migración, y fueron interpretados considerando la modelación de nicho presente, en el Último Interglacial y Último Máximo Glacial.  Resultados: El análisis de STRUCTURE con datos nucleares reveló dos grupos específicos a cada región, y un grupo compartido; un 47 % de SNPs fueron compartidos entre variedades. Nuestros datos apoyan un evento de fragmentación a principios del último interglacial (126k-148ky AP), que resultó en menores tamaños efectivos poblacionales en el Sur, así como contacto secundario durante periodos glaciales. La divergencia estuvo acompañada por estasis poblacional como sugiere una D de Tajima no significativa en secuencias de plastoma.  Conclusiones: Durante la divergencia de P. greggii hubo acumulación de diferencias a lo largo del genoma, mientras que el flujo génico produjo patrones asimétricos de alelos compartidos. Nuestro estudio documenta la efectividad de sistemas montañosos en aislar poblaciones, y apunta medidas de conservación para el linaje sur de P. greggii.]]></p></abstract>
<kwd-group>
<kwd lng="en"><![CDATA[allopatric speciation]]></kwd>
<kwd lng="en"><![CDATA[Australes]]></kwd>
<kwd lng="en"><![CDATA[phylogeography]]></kwd>
<kwd lng="en"><![CDATA[speciation]]></kwd>
<kwd lng="en"><![CDATA[retention of ancient polymorphisms]]></kwd>
<kwd lng="es"><![CDATA[Australes]]></kwd>
<kwd lng="es"><![CDATA[especiación]]></kwd>
<kwd lng="es"><![CDATA[especiación alopátrica]]></kwd>
<kwd lng="es"><![CDATA[filogeografía]]></kwd>
<kwd lng="es"><![CDATA[retención de polimorfismos ancestrales]]></kwd>
</kwd-group>
</article-meta>
</front><back>
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