<?xml version="1.0" encoding="ISO-8859-1"?><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<front>
<journal-meta>
<journal-id>2007-4298</journal-id>
<journal-title><![CDATA[Botanical Sciences]]></journal-title>
<abbrev-journal-title><![CDATA[Bot. sci]]></abbrev-journal-title>
<issn>2007-4298</issn>
<publisher>
<publisher-name><![CDATA[Sociedad Botánica de México A.C.]]></publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id>S2007-42982024000200499</article-id>
<article-id pub-id-type="doi">10.17129/botsci.3446</article-id>
<title-group>
<article-title xml:lang="en"><![CDATA[Two chloroplast genomes with reduced inverted repeat regions in Mammillaria series Stylothelae (Cactaceae)]]></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Ortiz-Brunel]]></surname>
<given-names><![CDATA[Juan Pablo]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
<xref ref-type="aff" rid="Aaf"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[McKain]]></surname>
<given-names><![CDATA[Michael R.]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Zamora-Tavares]]></surname>
<given-names><![CDATA[Pilar]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
<xref ref-type="aff" rid="Aaf"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Ruiz-Sanchez]]></surname>
<given-names><![CDATA[Eduardo]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
<xref ref-type="aff" rid="Aaf"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Sánchez]]></surname>
<given-names><![CDATA[Daniel]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
<xref ref-type="aff" rid="Aaf"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Sandoval-Padilla]]></surname>
<given-names><![CDATA[Isaac]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[MacNeill]]></surname>
<given-names><![CDATA[Bryan N.]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Rodríguez]]></surname>
<given-names><![CDATA[Aarón]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
<xref ref-type="aff" rid="Aaf"/>
</contrib>
</contrib-group>
<aff id="Af1">
<institution><![CDATA[,Universidad de Guadalajara Centro Universitario de Ciencias Biológicas y Agropecuarias Departamento de Botánica y Zoología]]></institution>
<addr-line><![CDATA[Zapopan Jalisco]]></addr-line>
<country>México</country>
</aff>
<aff id="Af2">
<institution><![CDATA[,Zapopan  ]]></institution>
<addr-line><![CDATA[Zapopan Jalisco]]></addr-line>
<country>México</country>
</aff>
<aff id="Af3">
<institution><![CDATA[,The University of Alabama Department of Biological Sciences ]]></institution>
<addr-line><![CDATA[Tuscaloosa ]]></addr-line>
<country>USA</country>
</aff>
<aff id="Af4">
<institution><![CDATA[,Laboratorio Nacional de Identificación y Caracterización Vegetal  ]]></institution>
<addr-line><![CDATA[Zapopan Jalisco]]></addr-line>
<country>México</country>
</aff>
<aff id="Af5">
<institution><![CDATA[,Universidad de Guadalajara Centro Universitario de Ciencias Biológicas y Agropecuarias Departamento de Botánica y Zoología]]></institution>
<addr-line><![CDATA[Zapopan Jalisco]]></addr-line>
<country>México</country>
</aff>
<pub-date pub-type="pub">
<day>00</day>
<month>06</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="epub">
<day>00</day>
<month>06</month>
<year>2024</year>
</pub-date>
<volume>102</volume>
<numero>2</numero>
<fpage>499</fpage>
<lpage>512</lpage>
<copyright-statement/>
<copyright-year/>
<self-uri xlink:href="http://www.scielo.org.mx/scielo.php?script=sci_arttext&amp;pid=S2007-42982024000200499&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.mx/scielo.php?script=sci_abstract&amp;pid=S2007-42982024000200499&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.mx/scielo.php?script=sci_pdf&amp;pid=S2007-42982024000200499&amp;lng=en&amp;nrm=iso"></self-uri><abstract abstract-type="short" xml:lang="en"><p><![CDATA[Abstract  Background: The chloroplast genomes of Cactaceae exhibit boundary modifications in the inverted repeat regions (IRs), gene inversions, and deletions. Among nine Mammillaria species, three distinct chloroplast structures have been identified, although not all of these correspond to the morphology-based classification of the genus.  Question: Is there a distinct chloroplast genome structure in the species of Mammillaria series Stylothelae?  Studied species: Mammillaria bocasana and M. erythrosperma.  Study site and dates: Mexico from 2019 to 2023.  Methods: Chloroplast DNA was sequenced, and chloroplast genomes were de novo assembled using the Fast-Plast program. Complete plastome sequences were annotated and verified. The sequences were aligned in MAUVE program to detect possible structural changes. A maximum likelihood phylogeny was executed to evaluate the relationships of the studied species.  Results: The plastomes ranged from 107,368 bp in Mammillaria bocasana to 108,069 bp in M. erythrosperma. Both presented a quadripartite structure and contained 108 genes. The IRs were ~ 1,600 bp long and included the genes rpl2, rpl23 (pseudo), and trnI-CAU. MAUVE identified a ~ 21 kb inversion in the large single copy containing a block of genes related to photosynthesis. The phylogenetic analysis placed both species in a single clade separated from the other species within Mammillaria subg. Mammillaria.  Conclusions: The studied species of Mammillaria series Stylothelae exhibited a different and synapomorphic chloroplast genome structure. Other Mammillaria chloroplast genome structures have evolved independently in different lineages.]]></p></abstract>
<abstract abstract-type="short" xml:lang="es"><p><![CDATA[Resumen  Antecedentes:  Los genomas de cloroplasto de Cactaceae exhiben modificaciones en los límites de las regiones repetidas inversas (IRs), inversiones de genes y deleciones. En nueve especies de Mammillaria, se han encontrado tres estructuras de cloroplasto distintas, aunque no todas corresponden a las clasificaciones basadas en morfología.  Pregunta:  ¿Existe una estructura de genoma de cloroplasto distinta en las especies de Mammillaria serie Stylothelae?  Especies estudiadas: Mammillaria bocasana y M. erythrosperma.  Sitio y años de estudio:  México, de 2019 a 2023.  Métodos: ADN de cloroplasto fue secuenciado y los plastomas fueron ensamblados de novo usando el programa Fast-Plast. Las secuencias completas fueron anotadas y verificadas. Las secuencias fueron alineadas en el programa MAUVE para detectar posibles cambios estructurales. Un análisis filogenético con máxima verosimilitud evaluó las relaciones de las especies estudiadas.  Resultados: Los plastomas variaron desde 107,368 pb de longitud en Mammillaria bocasana hasta 108,069 pb en M. erythrosperma. Ambos presentaron una estructura cuadripartita y contuvieron 108 genes. Las IRs tuvieron ~1,600 pb y contuvieron los genes rpl2, rpl23 (pseudo) y trnI-CAU. MAUVE identificó una inversión de ~21 kb en la región larga de copia única que contiene genes relacionados con la fotosíntesis. El análisis filogenético recuperó a ambas especies como grupos hermanos dentro de Mammillaria subg. Mammillaria.  Conclusiones:  Las dos especies estudiadas de Mammillaria serie Stylothelae presentaron una estructura de plastoma sinapomórfica. Otras estructuras de plastomas de Mammillaria han evolucionado independientemente en linajes diferentes.]]></p></abstract>
<kwd-group>
<kwd lng="en"><![CDATA[isomeric plastomes]]></kwd>
<kwd lng="en"><![CDATA[ndh genes]]></kwd>
<kwd lng="en"><![CDATA[plastome]]></kwd>
<kwd lng="en"><![CDATA[structure]]></kwd>
<kwd lng="es"><![CDATA[plastomas isoméricos]]></kwd>
<kwd lng="es"><![CDATA[estructura]]></kwd>
<kwd lng="es"><![CDATA[genes ndh]]></kwd>
<kwd lng="es"><![CDATA[plastoma]]></kwd>
</kwd-group>
</article-meta>
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