<?xml version="1.0" encoding="ISO-8859-1"?><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<front>
<journal-meta>
<journal-id>2007-1124</journal-id>
<journal-title><![CDATA[Revista mexicana de ciencias pecuarias]]></journal-title>
<abbrev-journal-title><![CDATA[Rev. mex. de cienc. pecuarias]]></abbrev-journal-title>
<issn>2007-1124</issn>
<publisher>
<publisher-name><![CDATA[Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias]]></publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id>S2007-11242019000300643</article-id>
<article-id pub-id-type="doi">10.22319/rmcp.v10i3.4842</article-id>
<title-group>
<article-title xml:lang="en"><![CDATA[Genetic variability in a Holstein population using SNP markers and their use for monitoring mating strategies]]></article-title>
<article-title xml:lang="es"><![CDATA[Variabilidad genética en una población de vacas Holstein utilizando marcadores SNP y su uso para monitorear estrategias de apareamiento]]></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Scienski]]></surname>
<given-names><![CDATA[Kathy]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
<xref ref-type="aff" rid="Aaf"/>
<xref ref-type="aff" rid="A a"/>
<xref ref-type="aff" rid="A3"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Ialacci]]></surname>
<given-names><![CDATA[Angelo]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Bagnato]]></surname>
<given-names><![CDATA[Alessandro]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Reginelli]]></surname>
<given-names><![CDATA[Davide]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Durán-Aguilar]]></surname>
<given-names><![CDATA[Marina]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Strillacci]]></surname>
<given-names><![CDATA[Maria Giuseppina]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
</contrib-group>
<aff id="Af1">
<institution><![CDATA[,Texas A&amp;M University College Station ]]></institution>
<addr-line><![CDATA[ Texas]]></addr-line>
<country>USA</country>
</aff>
<aff id="Af2">
<institution><![CDATA[,Texas A&amp;M University Department of Animal Science ]]></institution>
<addr-line><![CDATA[ Texas]]></addr-line>
<country>USA</country>
</aff>
<aff id="Af3">
<institution><![CDATA[,Università degli Studi di Milano Department of Veterinary Medicine ]]></institution>
<addr-line><![CDATA[Milano ]]></addr-line>
<country>Italy</country>
</aff>
<aff id="Af4">
<institution><![CDATA[,Università degli Studi di Milano  ]]></institution>
<addr-line><![CDATA[Pavia ]]></addr-line>
<country>Italy</country>
</aff>
<aff id="Af5">
<institution><![CDATA[,Universidad Autónoma de Querétaro Facultad de Ciencias Naturales ]]></institution>
<addr-line><![CDATA[ Querétaro]]></addr-line>
<country>Mexico</country>
</aff>
<pub-date pub-type="pub">
<day>00</day>
<month>09</month>
<year>2019</year>
</pub-date>
<pub-date pub-type="epub">
<day>00</day>
<month>09</month>
<year>2019</year>
</pub-date>
<volume>10</volume>
<numero>3</numero>
<fpage>643</fpage>
<lpage>663</lpage>
<copyright-statement/>
<copyright-year/>
<self-uri xlink:href="http://www.scielo.org.mx/scielo.php?script=sci_arttext&amp;pid=S2007-11242019000300643&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.mx/scielo.php?script=sci_abstract&amp;pid=S2007-11242019000300643&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.org.mx/scielo.php?script=sci_pdf&amp;pid=S2007-11242019000300643&amp;lng=en&amp;nrm=iso"></self-uri><abstract abstract-type="short" xml:lang="en"><p><![CDATA[Abstract As genotyping costs continue to decrease, the demand for genotyping has increased among farmers. In most livestock herds, an important issue is controlling the increase in inbreeding coefficient. While this remains a large motive to genotype, producers are often unaware of the other benefits that genotyping could bring. The aim of this study was to demonstrate that SNP chips could be used as an effective herd management tool by utilizing a population of Italian Holstein-Friesian cattle. After filtering, the total number of animals and SNPs retained for analyses were 44 and 27,365, respectively. The principal component analyses (PCA) were able to identify a sire and origin-of-sire effect within the herd, while determining that sires do not influence individual genomic selection index values. The inbreeding coefficients calculated from genotypes (F IS) provided a glimpse into the herd&#8217;s heterozygosity and determined that the genetic variability is being well maintained. On the other hand, inbreeding coefficients on the genomic level were deduced from runs of homozygosity (F ROH) and were compared to the inbreeding coefficients based on pedigree (F PED). Furthermore, 1,950 runs of homozygosity (ROH) were identified with the average length of ROH being 4.66 Mb. Genes and QTL within the genomic regions most commonly associated (top 1% and top 5% of SNP) with ROH were characterized. These results indicate that genotyping small herds, albeit at low-density, provides insights to the genetic variability within the herd and thus allows producers the ability to manage their stock from a genetic standpoint.]]></p></abstract>
<abstract abstract-type="short" xml:lang="es"><p><![CDATA[Resumen A medida que disminuyen los costos de la genotipificación, la demanda de ésta crece entre los ganaderos. En la mayoría de los hatos pecuarios es importante controlar el aumento del coeficiente de consanguinidad. Si bien esto es un motivo considerable para llevar a cabo la genotipificación, con frecuencia los productores desconocen los demás beneficios que puede traerles. El propósito de este estudio fue demostrar que es posible utilizar los chips SNP como una herramienta eficaz para el manejo de los hatos utilizando una población de ganado italiano Holstein-Friesian. Después de filtrar, se retuvo un total de 44 animales y 27,365 SNP para analizarlos. Los análisis de componentes principales (ACP) lograron identificar al progenitor y el efecto del origen del mismo en los análisis de componentes (ACP), y a la vez determinar que los sementales no influyen en los valores individuales del índice de selección genética. Los coeficientes de consanguinidad calculados a partir de los genotipos (F IS) permitieron tener un atisbo de la heterocigosidad del hato y determinar que la variabilidad genética se está manteniendo exitosamente. Por otra parte, se dedujeron los coeficientes de consanguinidad a nivel genético con base en los tramos de homocigosidad (F ROH) y se los comparó con los índices de consanguinidad basados en el pedigrí (F PED). Además, se identificaron 1,950 tramos de homocigosidad (ROH) con una longitud promedio de ROH de 4.66 Mb. Se caracterizaron los genes y QTL dentro de las regiones genéticas más comúnmente asociadas (primer 1 % y primer 5 % de los SNP). Estos resultados indican que la genotipificación de hatos pequeños, aunque a una densidad baja, facilita una mejor comprensión de la variabilidad genética dentro del hato y así, permiten a los productores gestionar su ganado desde una perspectiva genética.]]></p></abstract>
<kwd-group>
<kwd lng="en"><![CDATA[SNP genotypes]]></kwd>
<kwd lng="en"><![CDATA[Holstein-Friesian]]></kwd>
<kwd lng="en"><![CDATA[Inbreeding]]></kwd>
<kwd lng="en"><![CDATA[Runs of homozygosity]]></kwd>
<kwd lng="en"><![CDATA[Herd management]]></kwd>
<kwd lng="es"><![CDATA[Genotipos SNP]]></kwd>
<kwd lng="es"><![CDATA[Holstein-Friesian]]></kwd>
<kwd lng="es"><![CDATA[Consanguinidad]]></kwd>
<kwd lng="es"><![CDATA[Tramos de homocigosidad]]></kwd>
<kwd lng="es"><![CDATA[Manejo de rebaños]]></kwd>
</kwd-group>
</article-meta>
</front><back>
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