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Botanical Sciences

versión On-line ISSN 2007-4476versión impresa ISSN 2007-4298

Bot. sci vol.103 no.3 México jul./sep. 2025  Epub 09-Sep-2025

https://doi.org/10.17129/botsci.3679 

Physiology

Effect of pollen source on germination of Vanilla planifolia, V. pompona (Orchidaceae), and their interspecific hybrids

José Martín Barreda-Castillo1  , Conceptualization, Investigation, Writing – review & editing
http://orcid.org/0000-0002-1698-7669

Emerson Ricardo Pansarin2  , Supervision, Writing – review & editing
http://orcid.org/0000-0002-0355-8363

Juan L. Monribot-Villanueva1  , Supervision, Writing – review & editing
http://orcid.org/0000-0003-2394-0524

Miguel Ángel Lozano-Rodríguez3  , Conceptualization, Investigation
http://orcid.org/0000-0003-0666-1822

José A. Guerrero-Analco1  *  , Supervision, Funding acquisition, Writing – review & editing
http://orcid.org/0000-0003-0998-757X

Rebeca Alicia Menchaca-García4  *  , Supervision, Funding acquisition, Writing – review & editing
http://orcid.org/0000-0002-4241-8304

1Red de Estudios Moleculares Avanzados, Instituto de Ecología (INECOL) A.C., Xalapa, Veracruz, Mexico.

2Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil.

3Facultad de Ciencias Agrícolas, Universidad Veracruzana, Xalapa, Veracruz, Mexico.

4Centro de Investigaciones Tropicales (CITRO), Universidad Veracruzana, Xalapa, Veracruz, Mexico.


Abstract

Background:

Vanilla planifolia and V. pompona exhibit low seed germination rates. Although their fruits are obtained through manual self-pollination, the effect of intra- and interspecific cross-pollination on their fruits and seeds remains unknown. Hybrids organisms are considered potential alternatives to traditional cultivation.

Questions:

How does cross-pollination affect germination in V. planifolia and V. pompona? Do hybrids seeds exhibit greater germination than their parental species?

Studied species:

Vanilla planifolia, V. pompona, V. planifolia × V. pompona, V. pompona × V. planifolia (Orchidaceae)

Study site and dates:

Mesa de Guadalupe, Alto Lucero, and La Concepción, Jilotepec, Veracruz, Mexico, in April 2024.

Methods:

Manual pollinations (self-pollination, geitonogamy, and metaxenia/xenia) were performed, and fruits from natural pollination were collected. Hybrids were only self-pollinated. Fruits and seeds were characterized, and seeds were planted in vitro under a 16:8 hours light-dark photoperiod, and total darkness.

Results:

Higher germination values occurred in natural pollination (67.83 % in V. planifolia and 44.66 % in V. pompona) and metaxenia/xenia (63.2 and 51.66 %, respectively), along with larger fruits and seeds. Geitonogamy exhibited intermediate results (24.46 and 22.79 %, respectively), while self-pollination resulted in the lowest values (4.82 % in V. planifolia and none in V. pompona). Hybrids produced larger fruits, but their seeds did not germinate. Light exposure enhanced germination.

Conclusions:

Intra- and interspecific cross pollination promotes germination in vanilla. Hybrid fruits could represent a commercial alternative to traditional vanilla crop.

Keywords: Geitonogamy; metaxenia; natural pollination; self-pollination; xenia

Resumen

Antecedentes:

Vanilla planifolia y V. pompona presentan bajas tasas de germinación. Aunque sus frutos son obtenidos mediante autopolinización manual, el efecto de la polinización cruzada intra- e interespecífica en sus frutos y semillas es desconocido. Organismos híbridos son considerados alternativas potenciales al cultivo tradicional.

Preguntas:

¿Cómo afecta la polinización cruzada la germinación en V. planifolia y V. pompona? ¿Semillas de híbridos presentan mayor germinación que sus especies parentales?

Especies de estudio:

Vanilla planifolia, V. pompona, V. planifolia × V. pompona, V. pompona × V. planifolia (Orchidaceae)

Sitio y años de estudio:

Mesa De Guadalupe, Alto Lucero, y La Concepción, Jilotepec, Veracruz, México, en abril de 2024.

Métodos:

Se realizaron polinizaciones manuales (autopolinización, geitonogamia, metaxenia/xenia), y se recolectaron frutos de polinización natural. Los híbridos solamente fueron autopolinizados. Se caracterizaron frutos y semillas, estas se sembraron in vitro bajo fotoperiodo 16:8 horas luz-oscuridad, y oscuridad total.

Resultados:

La germinación más alta ocurrió en polinización natural (67.83 % en V. planifolia y 44.66 % en V. pompona) y en metaxenia/xenia (63.2 y 51.66 %, respectivamente), asociadas a frutos y semillas mayores. La geitonogamia exhibió resultados intermedios (24.46 y 22.79 %, respectivamente), mientras que la autopolinización resultó en menores valores (4.82 % en V. planifolia, nula en V. pompona). Los híbridos produjeron frutos más grandes, pero semillas sin germinación. La exposición lumínica favoreció la germinación.

Conclusiones:

La polinización cruzada intra- e interespecífica promueve la germinación en vainilla. Los frutos de los híbridos representarían una alternativa comercial al cultivo tradicional.

Palabras clave: Autopolinización; geitonogamia; metaxenia; polinización natural; xenia

Vanilla planifolia Andrews (PL) is an orchid of commercial importance worldwide (Ranadive 2018), whose fruit has reached a price of up to 600 dollars per kilogram (Hernández-Hernández 2018). Vanilla fruits are highly valued for their aromatic quality, which is attributed to a combination of phenolic compounds, being vanillin the most important (Pérez-Silva et al. 2021). Despite its economic importance, PL is classified as a species under special protection in Mexico and globally protected by the International Union for Conservation of Nature (IUCN) Red List (Armenta-Montero et al. 2022). This is attributed to factors such as habitat loss, overexploitation, and genetic erosion, as its cultivation is carried out asexually through stem cuttings (Menchaca-García 2018). On the other hand, V. pompona Schiede (PO), a species belonging to the aromatic vanilla clade, produces fruits that also contain vanillin (albeit in smaller amounts than PL), along with other phenolic compounds that give it a unique aromatic profile, granting it significant potential in the food and perfume industries (Maruenda et al. 2013, de Oliveira et al. 2022, Ravier et al. 2024).

The production of vanilla fruits in both PL and PO relies mainly on the manual self-pollination of flowers, due to low rates of natural fruit set, which typically do not exceed 10 % of the flowers produced (Soto-Arenas & Dressler 2009, Pansarin & Pansarin 2014). Flowers of Vanilla species show a rostellum that prevent direct contact between the male and female structures, suggesting a possible adaptation to avoid self-pollination (Lubinsky et al. 2008, Zhang et al. 2021, de Oliveira et al. 2022). However, pollination in Vanilla commonly involves the manual transfer of the pollen mass to the stigma of the same flower, inducing self-fertilization (Barreda-Castillo et al. 2024).

PL and PO have been multiplied through stem cutting propagation (i.e., asexual reproduction), which has caused, in the case of PL, genetic erosion and, consequently, greater susceptibility to biotic and abiotic stress conditions (Watteyn et al. 2020, Armenta-Montero et al. 2022). Although obtaining individuals from seed ameliorates genetic erosion, seeds obtained through self-pollination in PL have shown in vitro germination rates of up to 5 % (Yeh et al. 2021), while germination has not been reported in PO (Menchaca-García et al. 2011). This could suggest, along with the mechanical barriers (i.e., rostellum), a possible genetic self-incompatibility (Suetsugu 2015, Zhang et al. 2021, de Paiva-Neto et al. 2022, Ackerman et al. 2023).

In contrast, it has been reported that cross-pollination (i.e., allogamy) can promote the production of viable and bigger seeds (São Leão et al. 2019). Allogamy can occur in two ways: either through xenogamy (pollination between flowers of different individuals) or through geitonogamy (pollination between flowers of the same individual) (Bateman 2020, de Oliveira et al. 2022). To date, it has been considered that xenogamy exhibits the best effects on fruit and seed production (Caballero-Villalobos et al. 2017, Emeterio-Lara et al. 2018, São Leão et al. 2019); nonetheless, pollination by geitonogamy has also resulted in the production of seeds with higher germination rates in some orchid species (Humaña et al. 2008, Johnson et al. 2009, Buragohain et al. 2016).

In addition, xenia and metaxenia have been considered as a possible alternative for the improvement of vanilla cultivation (Barreda-Castillo et al. 2024). Xenia and metaxenia are understood as the effect of foreign pollen (different species, but from the same genus) on the formation of seeds and fruits, respectively (Sabir 2015, MacInnis & Forrest 2020). It has been reported in other important crops, such as cucumber and grape, that seeds resulting from xenia are typically larger, along with higher germination rates and seedling development (Olfati et al. 2010, Dhakad et al. 2024), something needed in Vanilla. In turn, metaxenia allows to produce larger fruits or even fruits with biochemical changes such as increased concentrations of sugars or phenolic compounds (Suaib et al. 2020, Shahsavar & Shahhosseini 2022). Considering that the flowering of PL and PO coincide phenologically (Barreda-Castillo et al. 2023a) and that they are usually cultivated together (de Oliveira et al. 2022, Ravier et al. 2024), pollination by metaxenia/xenia could be considered as an alternative for this crop.

Related to xenia is the production of hybrid organisms, as it is an interspecific pollination (Kanade et al. 2024). In this sense, hybrids V. planifolia × V. pompona (PL × PO) and V. pompona × V. planifolia (PO × PL), obtained by Menchaca-García et al. (2011), have exhibited resistance to diseases such as root-stem rot caused by Fusarium oxysporum f. sp. vanillae (Barreda-Castillo et al. 2023b), as well as drought tolerance (Barreda-Castillo et al. 2023c); so, it has been considered that they might be an alternative to traditional vanilla cultivation. However, the sexual reproduction capacity of these particular organisms is still unknown. It was hypothesized that cross-pollination, particularly metaxenia/xenia and natural pollination, would result in larger fruits in PL and PO, as well as bigger seeds with higher germination rates, when compared to geitonogamy and self-pollination, with values equal or even higher than those obtained from their interspecific hybrids. Therefore, this study aimed to determine the effect of pollen source on the germination of Vanilla planifolia, V. pompona, and their interspecific hybrids in field conditions, with the goal of promoting seedling production from seeds.

Materials and methods

Study site. This study was conducted in two sites: Environmental Management Unit "Vainillales Tlali Nantli" (SEMARNAT-UMA-IN-VIV-0281-VER/19), located in Mesa de Guadalupe, municipality of Alto Lucero (-96° 42' W, 19° 34' N) at 851 m asl; and in an experimental vanilla plantation, located in La Concepción, municipality of Jilotepec (-96° 54' W, 19° 36' N) at 1,000 m asl. These sites belong to the Veracruz state in Mexico, and they are 21.28 km apart between them. Natural pollination has been recorded in both sites. Even though there is no evidence of natural pollinator of PL, it has been suggested that Euglossini bees could pollinated it (Soto- Arenas & Dressler 2009, Pansarin & Pansarin 2014). On the other hand, for PO it has been identified three species of Euglossini: Eulaema cingulata Fabricius, E. meriana Olivier, and E. bombiformis Packard (Pansarin 2023). Both E. cingulata and Euglossa spp. have been recorded in the study area (Lozano-Rodríguez et al. 2022). The species are cultivated outdoors, which are established on Inga vera Willd. and Bursera simaruba (L.) Sarg. trees as living tutors. Additionally, both species and hybrids are cultivated in greenhouse. Both sites have plants that were planted more than 10 years ago. The cultivation is carried out using organic matter as substrate, at 25 (± 5) °C, with weekly irrigation.

Breeding systems. Fruits from PL and PO were obtained through controlled manual pollinations: self-pollination and geitonogamy. Xenogamy was not carried out, as it was not possible to determine genetic differences among the individuals, as vanilla cultivation is usually done through stem cuttings. Additionally, cross-pollinations were performed between the species PL and PO in order to obtain xenia and metaxenia. Also, flowers of both species cultivated outdoors were left to observe the effect of natural pollination. In addition, the hybrid organisms PL × PO and PO × PL were self-pollinated for fruit production. Manual pollinations were carried out during April 2024, and during the same period natural pollination was monitored. Thus, in this study, we analyzed 10 treatments: four in PL (self-pollination, geitonogamy, natural pollination, and metaxenia/xenia), four in PO (self-pollination, geitonogamy, natural pollination, and metaxenia/xenia), along with self-pollination in PL × PO and PO × PL.

Morphological characterization of vanilla fruits. Five fruits from each treatment were harvested (n = 50) 45 days after pollination, the moment when the fruits reach their maximum length (Parra-Quezada 1987, Menchaca-García 2018, Barreda-Castillo et al. 2023a), and the highest seed germination percentage has been reported, as the seeds complete their development before the hardening of the seed coat (Menchaca-García 2018, Yeh et al. 2021). Total length (cm), diameter (cm) and fresh weight (g) were evaluated. Shape index of the fruits was calculated, defined as the ratio between length and diameter (Barreda-Castillo et al. 2023a).

Vanilla seed germination. The vanilla fruits from each treatment were washed with soapy solution and rinsed in tap water twice, carefully removing the floral remains from the ends. Then, they were immersed in a 2 % commercial bleach solution for 15 minutes, followed by immersion in 96 % ethyl alcohol for 10 minutes. The fruits were transferred to aseptic conditions in a laminar flow hood, flamed and later longitudinally dissected with a surgical scalpel. Seeds were extracted from the middle part of the fruits for in vitro culture. Murashige & Skoog (1962) culture medium was used in 235 mL jars, with 25 mL of culture medium. Each jar was used as an experimental unit, with 10 replicates per treatment (n = 100). There were ca. 200 seeds per jar. Five jars were exposed to light and five to darkness, the light exposure followed a photoperiod of 16 hours of light and 8 hours of darkness. In both cases, the seeds were incubated at 25 ± 2 °C. The germination of the seeds was evaluated 100 days after in vitro planting, when the highest germination percentage in Vanilla has been reported (Menchaca-García 2018, Yeh et al. 2021). Both the germination percentage and the germination index were calculated using the formulas reported by Pierik et al. (1988):

Germination percentage=100b+c+da+b+c+d-1 (1)

Germination Index=10b+2c+3da+b+c+d-1 (2)

where a, b, c, and d represent the frequency of each growth and development stage of the embryo: a = non-germinating stage; b = the embryo grows or swells without breaking the seed coat; c = the embryo emerges from the seed coat; and d = the embryo fully emerges from the seed coat. When germination does not occur the germination index is zero, while when all seeds germinate, i.e. 100 % germination is obtained, and all embryos are fully developed (stage d), the germination index is 30 (Pierik et al. 1988). Seed germination was observed through the jar to avoid contamination from handling. A graphical representation of the development stage of germination is shown in Figure 1.

Figure 1 Stages of germination development in Vanilla. A: non-germinating stage; B: the embryo grows or swells without breaking the seed coat; C: the embryo emerges from the seed coat; D: the embryo fully emerges from the seed coat. The figure is for illustrative purposes only; the structures are not to scale. Figure constructed from own data and from Pierik et al. (1988). Figure made by Erik Polaris Flores Ojeda. 

Morphological characterization of vanilla seeds. Thirty remaining seeds from the middle part of the fruits from each treatment were collected (n = 1,500). Length (µm) and width (µm) were evaluated, and shape index of seeds was calculated, defined as the ratio between length and width. The shape index, in both fruits and seeds, is a ratio between length and width, being dimensionless and a reflection of the proportions of the fruit/seed. Seed volume (mm3) was calculated using the formula proposed by Arditti & Ghani (2000):

Seed volume = 43-1πab2 (3)

where a= length value2-1, and b= width value2-1. Although the formula for calculating seed volume involves the length and width values, similar to the shape index, this calculation reflects the absolute size of the seed in volume units, not only a ratio. Seed measurements were taken using a Leica DM500 light microscope, with Leica Application Suite EZ software. Both the morphological characterization of fruits and seeds, as well as germination, were carried out at the facilities of the Orchidarium of Universidad Veracruzana (SEMARNAT-UMA-IN-VIV-0129-VER/11).

Statistical analysis. Concerning the morphological characterization of vanilla fruits, a two-factor arrangement was used: pollination type and vanilla genotype. Length, diameter, weight, and shape index were analyzed using two-way analysis of variance (ANOVA), post hoc Tukey (P = 0.05). Related to the morphological characterization of seeds, the same two-factor arrangement was used, and the variables length, width, shape index, and volume were analyzed using ANOVA, post hoc Tukey (P = 0.05).

In relation to seed germination, pollination type, vanilla genotype and light exposure were considered as factors. Germination percentage was analyzed using a generalized linear model (GLM) with a binomial distribution and logit link function (P = 0.05), while germination index was analyzed using a GLM with a Poisson distribution and log link function (P = 0.05). In all cases, the statistical software R v. 4.0.3 was used (R Core Team 2023), with packages Agricole (de Mendiburu 2023) for ANOVA, car (Fox & Weisberg 2019) and gmodels (Warnes et al. 2022) for GLM, and Rmisc (Hope 2022) and ggplot2 (Wickham 2016) for graphics.

Results

Morphological characterization of vanilla fruits. The morphological parameters evaluated regarding the formation of vanilla fruits were affected by the pollen source. Contrasts between vanilla fruits are shown in Figure 2. The longest fruits were obtained in natural pollination and metaxenia, followed by geitonogamy and self-pollination in both PL (Figure 2A-D) and PO (Figure 2F-I) (F 3,46 = 326.86, P < 0.01). PL × PO fruits showed a length similar to PL obtained by self-pollination, while PO × PL exhibited higher values than the other hybrid and PL and PO under self-pollination (Table 1). Related to fruit diameter, metaxenia in PO exhibited the highest value, followed by natural pollination and geitonogamy, while no significant differences were observed in PL among the different pollination types (F 3,46 = 218.791, P < 0.01). Fruits from both hybrids exhibited higher values than PL, but lower compared to PO (Table 1). The weight of vanilla fruits was also influenced by pollen source, with metaxenia fruits from both species being the heaviest, followed by natural pollination and geitonogamy (F 3,46 = 7196, P < 0.01). PO × PL fruits exhibited greater weight than PL × PO fruits, and both hybrids showed higher values than PL, but lower compared to PO (Table 1). Fruit shape index exhibited an increase in metaxenia and natural pollination in PL, whereas in PO resulted in a reduction, compared with the other pollen sources (F 3,46 = 187.949, P < 0.01). Both hybrids exhibited higher values than PO, but lower than PL (Table 1).

Figure 2 Fruits of Vanilla planifolia (A-D), V. planifolia × V. pompona (E), V. pompona (F-I), and V. pompona × V. planifolia (J), resulting from self-pollination (A, F, E, J), geitonogamy (B, G), natural pollination (C, H), and metaxenia (D, I). Scale bar = 5 cm. 

Table 1 Morphological characterization of fruits of the species Vanilla planifolia (PL) and V. pompona (PO), and the hybrids V. planifolia × V. pompona (PL × PO) and V. pompona × V. planifolia (PO × PL), resulting from self-pollination, geitonogamy, natural pollination, and metaxenia. Data are shown as mean ± standard error (n = 50). Different letters indicate significant differences between treatments (P < 0.05), according to ANOVA. 

Genotype Pollination Length (cm) Diameter (cm) Weight (g) Shape index
PL Self-pollination 12.56 ± 0.17e 1.08 ± 0.07g 5.22 ± 0.09j 11.80 ± 0.63b
Geitonogamy 14.76 ± 0.10c 1.32 ± 0.08f 7.54 ± 0.16i 11.33 ± 0.62b
Natural 18.26 ± 0.13b 1.32 ± 0.06f 12.4 ± 0.18e 13.93 ± 0.56a
Metaxenia 19.46 ± 0.13a 1.46 ± 0.09f 15.72 ± 0.12g 13.53 ± 0.80a
PO Self-pollination 11.62 ± 0.09f 2.08 ± 0.04d 16.34 ± 0.19d 5.59 ± 0.07e
Geitonogamy 13.24 ± 0.11d 2.3 ± 0.03c 23 ± 0.07c 5.76 ± 0.08e
Natural 14.38 ± 0.19c 2.46 ± 0.05b 24.3 ± 0.07b 5.85 ± 0.09e
Metaxenia 14.46 ± 0.12c 2.8 ± 0.04a 25.58 ± 0.09a 5.17 ± 0.05f
PL × PO Self-pollination 12.62 ± 0.20e 1.82 ± 0.07e 9.26 ± 0.08h 6.96 ± 0.21d
PO × PL Self-pollination 13.6 ± 0.19d 1.7 ± 0.05e 13.26 ± 0.14f 8.03 ± 0.23c

Morphological characterization of vanilla seeds. Seed length, width, and volume were influenced by the pollen source (Figure 3). It should be highlighted that developed seeds (up to before seed coat hardening) were observed in all treatments (Figure 3). Seeds from xenia and natural pollination in PL and PO exhibited the greatest values in length (F 3,1496 = 122.678, P < 0.01) and width (F 3,1496 = 47.782, P < 0.01), while seeds from self-pollination were the smallest. Hybrids showed no differences in seed length between them, with PO × PL exhibiting higher width than PL × PO (Table 2). Seed volume was affected by pollen source, since xenia and natural pollination produced seeds with the highest volume in both PL and PO (F 3,1496 = 220.757, P < 0.01). Seeds from PO × PL exhibited higher volume compared to PL × PO seeds (Table 2). No significant differences in seed shape index were found among groups (F 3,1496 = 2.117, P = 0.0962) (Table 2).

Figure 3 Seeds of Vanilla planifolia (A-D), V. planifolia × V. pompona (E), V. pompona (F-I), and V. pompona × V. planifolia (J), resulting from self-pollination (A, F, E, J), geitonogamy (B, G), natural pollination (C, H), and xenia (D, I). Scale bar = 100 µm. 

Table 2 Morphological characterization of seeds from the species Vanilla planifolia (PL) and V. pompona (PO), and the hybrids V. planifolia × V. pompona (PL × PO) and V. pompona × V. planifolia (PO × PL), resulting from self-pollination, geitonogamy, natural pollination, and xenia. Data are expressed as mean ± standard error (n = 1,500). Different letters indicate significant differences between treatments (P < 0.05), according to ANOVA. 

Genotype Pollination Length (µm) Width (µm) Shape index Volume (mm3)
PL Self-pollination 301 ± 2.38f 227.42 ± 2.27e 1.32 ± 0.009a 0.0082 ± 0.00023g
Geitonogamy 318.96 ± 2.66e 237.26 ± 2.73d 1.34 ± 0.017a 0.0095 ± 0.00022f
Natural 335.32 ± 2.18d 257.39 ± 3.08c 1.31 ± 0.032a 0.0118 ± 0.00032e
Xenia 347.38 ± 2.91c 261.12 ± 2.94c 1.33 ± 0.012a 0.0125 ± 0.00035e
PO Self-pollination 361.69 ± 5.27b 276.41 ± 6.96b 1.31 ± 0.032a 0.0151 ± 0.00039c
Geitonogamy 368.11 ± 4.83b 275.82 ± 7.12b 1.34 ± 0.035a 0.0152 ± 0.00040c
Natural 389.65 ± 5a 298.86 ± 6.94a 1.31 ± 0.028a 0.0189 ± 0.00049b
Xenia 402.19 ± 5.15a 306.95 ± 7.4a 1.31 ± 0.027a 0.0203 ± 0.00044a
PL × PO Self-pollination 355.42 ± 4.19bc 245.27 ± 6.76d 1.37 ± 0.048a 0.0117 ± 0.00046e
PO × PL Self-pollination 365.91 ± 4.57bc 263.75 ± 4.4bc 1.39 ± 0.029a 0.0135 ± 0.00047d

Vanilla seed germination. Germination percentage was influenced by pollen source (χ2 3, 96 = 29.116, P < 0.05) (Table S1). The highest values were recorded in seeds from natural pollination and xenia in PL and PO. Geitonogamy exhibited intermediate values, and the lowest values were found in self-pollination in PL, whereas no germination was recorded in seeds obtained by self-pollination in PO and neither in the hybrids (Table 3). Germination index was also affected by the pollen source (χ2 3, 96 = 19.366, P < 0.05) (Table S2). Again, seeds from natural pollination and xenia exhibited the greatest values and therefore greatest development. (Table 3, Figure 4).

Table 3 Germination percentage and germination index of seeds, exposed to light and darkness, from the species Vanilla planifolia (PL) and V. pompona (PO), and the hybrids V. planifolia × V. pompona (PL × PO) and V. pompona × V. planifolia (PO × PL), resulting from self-pollination, geitonogamy, natural pollination, and xenia. Data are presented as mean ± standard error (n = 100). Different letters indicate significant differences between treatments (P < 0.05), according to GLM. 

Genotype Pollination Condition Germination percentage Germination index
PL Self-pollination Light 4.82 ± 0.35h 0.5 ± 0.02g
Darkness 3.89 ± 0.34h 0.39 ± 0.03h
Geitonogamy Light 24.46 ± 1.13de 2.49 ± 0.13cd
Darkness 7.54 ± 0.44g 0.75. ± 0.04f
Natural Light 67.83 ± 0.81a 9.29 ± 0.027a
Darkness 26.63 ± 1.12d 2.74 ± 0.12c
Xenia Light 63.20 ± 2.96a 8.88 ± 0.46a
Darkness 28.10 ± 2.23d 2.91 ± 0.23c
PO Self-pollination Light 0 ± 0i 0 ± 0i
Darkness 0 ± 0i 0 ± 0i
Geitonogamy Light 22.79 ± 0.84e 2.46 ± 0.11d
Darkness 13.01 ± 0.52f 1.43 ± 0.05e
Natural Light 44.66 ± 1.29c 5.28 ± 0.17b
Darkness 21.06 ± 0.78e 2.30 ± 0.09d
Xenia Light 51.66 ± 1.83b 8.29 ± 0.46a
Darkness 21.94 ± 1.35e 2.27 ± 0.14d
PL × PO Self-pollination Light 0 ± 0i 0 ± 0i
Darkness 0 ± 0i 0 ± 0i
PO × PL Self-pollination Light 0 ± 0i 0 ± 0i
Darkness 0 ± 0i 0 ± 0i

Figure 4 Germination of seeds from the species Vanilla planifolia (A-C), and V. pompona (D-F), resulting from geitonogamy (A, D), natural pollination (B, E), and xenia (C, F). Scale bar = 1 cm. 

Light exposure was a significant factor in germination, as seeds exposed to a photoperiod exhibited higher germination percentages (χ2 1, 98 = 9.955, P < 0.05) and index values (χ2 1, 98 = 124.436, P < 0.05) (Supplementary material, Tables S1 and S2). In PL, light exposure increased germination percentage by 1.2 times in self-pollination, 3.2 times in geitonogamy, 2.5 times in natural pollination, and 2.3 times in xenia. Besides, in PO increased 1.8 times in geitonogamy, 2.1 times in natural pollination, and 2.4 times in xenia (Table 3). The germination index also increased with photoperiod, in PL by 1.3 times in self-pollination, 3.3 times in geitonogamy, 3.4 times in natural pollination, and 3 times in xenia. In addition, in PO increased 1.7 times in geitonogamy, 2.3 times in natural pollination, and 3.6 times in xenia (Table 3). Protocorm formation was recorded in both species in seeds from geitonogamy, natural pollination, and xenia, but only when they were exposed to photoperiod (Figure 4).

Discussion

Fruit and seed production in species. To date, only effects of self-pollination on fruit and seed production had been reported for both PL and PO, along with low germination percentages (Menchaca-García 2018). For the first time, it is shown that the pollen source affects fruit and seed production in PL and PO, seed germination is finally achieved in PO, and comparisons with their interspecific hybrids are made. Although fruits were obtained in all treatments (species and hybrids), this does not imply the production of viable seeds, as the mere placement of the pollinium on the stigma induces fruit formation, due to auxins like indole-3-acetic acid, as reported in Restrepia, Dendrobium, and Cymbidium (Arditti & Knauft 1969, Arditti 1992, Promyou et al. 2014, Millner et al. 2015, Doorn & Ketsa 2021).

Seed formation was recorded until testa development in all treatments, suggesting that seed development was not ceased, whether or not the ovules were fertilized (Brandvain & Haig 2005, Rodrigues & Borba 2023, Wang & Filatov 2023). Testa development is known to be independent of embryo development (Chaudhury et al. 2001, Dumas & Rogowsky 2008, Arathi 2011, Rogo et al. 2023), which might happens in Vanilla, a genus characterized by its hardened testa (Lee & Yeung 2023). Since fruit and seed production were observed in species and hybrids, differences among treatments should then be related to pollen source in the pollination process and therefore linked to issues of genetic material recognition (Brandvain & Haig 2005, Zhang et al. 2021, Rodrigues & Borba 2023). Our results suggest that self-incompatibility could be manifested during fertilization, particularly in embryo development.

Effect of self-pollination. Historically, both PL and PO have been manually self-pollinated in order to enhance fruit production, given the low natural fruit set (Soto-Arenas & Dressler 2009). Although self-pollination induced fruit formation in both species, PL produced seeds with low germination percentage, or none at all in PO, suggesting partial self-incompatibility (Chabert et al. 2024, Polizelli-Ricci et al. 2024). This may also explain the smaller fruits and seeds resulting from self-pollination. Viable seeds induce biochemical changes, particularly auxin production, in order to promote their self-development (Arditti 1992, Millner et al. 2015). This also increases fruit size by modifying the maternal tissues responsible for seed nutrition (Chaudhury & Berger 2001, Chaudhury et al. 2001, Arathi 2011). In the absence of viable seeds, fruit growth would be mainly related to the auxins from the pollen mass. The reduced germination in PL and the absence in PO would explain the smaller size of self-pollinated fruits, compared to those from other pollen sources.

Effect of geitonogamous pollination. Geitonogamy showed slightly better results than self-pollination in fruit and seed production, as well as germination. Similar results were found in Chloraea crispa Lindl., Eulophia alta (L.) Fawc. & Rendle, and Phaius tankervilleae (King & Pantl.) Karthik. (Humaña et al. 2008, Johnson et al. 2009, Buragohain et al. 2016). Although geitonogamy is technically cross-pollination, as it involves the exchange of pollen between flowers (Lanzino et al. 2023), it resembles autogamy, since the pollen comes from the same organism (Kropf & Renner 2008). However, pollen production involves genetic variation, and within this subtle variability, geitonogamous pollination (by realizing cross-pollination) may result in slightly greater genetic variability compared to self-pollination (Willmer 2011). This subtle genetic difference might be the reason why the germination percentage increased in PL, and germination was finally achieved in PO.

Effect of natural pollination. It is considered superior to manual pollination, since it results in larger fruits and seeds with higher viability in Orchidaceae (Metsare et al. 2015, Emeterio-Lara et al. 2018, São Leão et al. 2019). These benefits are related to pollinators, mainly euglossine bees in Orchidaceae (de Oliveira et al. 2022), due to they perform cross-pollination, particularly xenogamy (Scopece et al. 2014). Nevertheless, it is not possible to assert that natural pollination in vanilla is synonymous with xenogamy, since the pollen source during natural pollination was not tracked in this study, and most vanilla plantations are usually established through stem cuttings (Hernández-Hernández 2018). Thus, genetic differences among individuals must be verified in order to confirm a xenogamy effect (Tremblay et al. 2005, São Leão et al. 2019, Wurz et al. 2021), in addition to verify pollen load.

Natural pollination produced larger fruits and seeds with higher germination, compared to geitonogamy, possibly related to pollinators depositing more and better-positioned pollen on the stigma, enhancing fertilization (Chautá-Mellizo et al. 2012, Klatt et al. 2014, Eeraerts et al. 2020, Wurz et al. 2021). In orchids, this precision could be related to specific structures in floral-pollinator interaction, touching the reproductive structures at the precise angle and direction, unlike manual pollination which may damage the pollen mass (Ackerman 1983, Suetsugu & Fukushima 2014, Baguette et al. 2020). Besides, pollen grains desiccation during transport may enhance their activity (Pacini & Hesse 2002, Firon et al. 2012). Pollination success in Vanilla is more limited by the brief viability of the stigma than by pollen viability (Divakaran et al. 2006, 2016). While pollinator behavior was not recorded in this study, these results contribute to promote agroecological practices that favor pollinator abundance (Nicholls & Altieri 2013).

Effect of metaxenia/xenia. Although a preliminary study exists on the metaxenia effect in vanilla fruits (Barreda-Castillo et al. 2023a), to best of our knowledge, this is the first formal report on the study of the effect of xenia in vanilla seeds. Metaxenia altered fruit shape index in both species, increasing in PL and decreasing in PO, both compared to self-pollination in their respective species. This uneven effect has been reported previously (Dhakad et al. 2024), potentially related to a difference in vigor between the pollen donors (Keulemans et al. 1996, Dhakad et al. 2024). PO is more vigorous than PL (Soto-Arenas & Dressler 2009, Flores-Jiménez et al. 2017), which could explain why shape index increases in PL (when PO is the pollen donor), whereas it decreases in PO (when PL is the pollen donor).

Proposed mechanisms for metaxenia/xenia include volatile compounds from pollen from a different species triggering chemical signaling in the ovary (Deng et al. 2022). Xenia often results in larger seeds and higher germination percentage (Olfati et al. 2010, Sabir 2015, MacInnis & Forrest 2020), possibly related to a greater paternal gene control during seed development, suppressing maternal gene regulations and thereby leading to the production of larger seeds (de Jong & Scott 2007). Xenia seeds tend to produce a greater concentration of auxins, cytokinins, and gibberellins than those seeds obtained by self-pollination (Kanade et al. 2024), enhancing metaxenia effects and also self-promoting germination. These effects have been recorded in crops such as apple (Bodor et al. 2008, Militaru et al. 2015), date (Swingle 1928, Shahsavar & Shahhosseini 2022), strawberry (MacInnis & Forrest 2020), dragon fruit (Mizrahi et al. 2004), cucumber (Olfati et al. 2010), grape (Sabir 2015, Dhakad et al. 2024), pear (Cheng et al. 2020), and maize (Suaib et al. 2020), among others. However, it remains unknown whether these mechanisms would operate in the same way in orchids. Xenia is directly related to the production of hybrid organisms, as it requires the participation of two species (Preston & Pearman 2015, Goulet et al. 2017). This is significant in Orchidaceae, the plant family with the highest hybridization potential (Fiorini et al. 2023); yet, the process of xenia remains unknown.

Metaxenia/xenia could be an immediate improvement strategy for vanilla producers, as PL and PO are companion species that flower synchronously (Ravier et al. 2024). Since vanilla farmers are already skilled in manual pollination (Cameron 2011, Hernández-Hernández 2018), so, they could cross-pollinate PL and PO. It is also suggested to consider other Vanilla species as pollen donors in order to determine if they exhibit similar effects, indirectly obtaining new hybrid organisms with potential new traits, contributing to the development of breeding programs for Vanilla species (Watteyn et al. 2023).

Fruit and seed production in hybrids. PO × PL produced larger fruits than PL × PO, and fruits from both hybrids were larger than PL fruits obtained from traditional pollination, suggesting that hybrid production could be a strategy for improving PL cultivation, at least in terms of morphological traits and stress resistance (Divakaran et al. 2006, 2016, Chambers 2019, Grisoni & Nany 2021). PO traits were more pronounced when it was the maternal species, likely due to a higher gene expression of traits from the ovule donor species (Havkin-Frenkel & Belanger 2018, Barreda-Castillo et al. 2024). This phenomenon is possibly related to plastid/mitochondrial genome transfer (Daniell et al. 2021, Park et al. 2021), or even to epigenetic regulation (Baulcombe & Dean 2014, Kumar & Singh 2016).

Seeds from PL × PO were larger than those from PL produced by self-pollination, while seeds from PO × PL were similar in size to those from PO obtained by self-pollination. However, hybrid seeds exhibited no germination. Although hybrids may eventually become into new species (Li et al. 2021, Evans et al. 2023), some may face germination difficulties due to issues related to the meiosis process (Dumas & Rogowsky 2008, Pinheiro & Cozzolino 2013, Pinheiro et al. 2016, Marques et al. 2018, Shang et al. 2020, Arida et al. 2021), or genetic incompatibilities, according to the Bateson-Dobzhansky-Muller model (Orr & Turelli 2001, Arida et al. 2021). Despite the idea that hybrids could potentially replace their parent species (Chung et al. 2005), the lack of germination in hybrid seeds might suggest the absence of ecological competition.

Both hybrids have shown resistance to water stress (Barreda-Castillo et al. 2023c), and to root-stem rot caused by F. oxysporum f. sp. vanillae (Barreda-Castillo et al. 2023b). In the present study is added new information related to their fruits, specifically about their morphological characterization. Thus, pending to determine the content of aromatic compounds, the use of these vanilla hybrids is proposed as an alternative to traditional vanilla cultivation (Havkin-Frenkel & Belanger 2018, Chambers 2019), since they could produce larger fruits while also being tolerant plants, along with the fact that their seeds fail to germinate and therefore would not pose a risk of ecological competition. A summary about the effect of pollen source in fruit and seed production in PL, PO, and their interspecific hybrids is shown in Figure 5.

Figure 5 Effect of pollen source in Vanilla planifolia, V. pompona, and their interspecific hybrids. The effect of self-pollination (S), geitonogamy (G), natural pollination (N) and metaxenia/xenia (M/X) is highlighted. Red circles indicate empty seeds inside the fruit, whereas black ones indicate viable seeds. The proportion of empty seeds to viable seeds shown in each treatment was calculated based on the germination percentage observed under a 16:8 light:dark photoperiod in the present study. The figure includes data from the present study and from the literature (Johnson & Edwards 2000, Chaudhury & Berger 2001, Orr & Turelli 2001, Pacini & Hesse 2002, Olfati et al. 2010, Arathi 2011, Pinheiro & Cozzolino 2013, Millner et al. 2015, Sabir 2015, Emeterio-Lara et al. 2018, Zhang et al. 2021, Deng et al. 2022, Chabert et al. 2024, Kanade et al. 2024). 

Other factors affecting germination in Vanilla. The use of immature seeds (collected 45 days post-pollination) improves germination, since the embryo is fully developed and the testa has not yet hardened (Swamy 1949, Menchaca-García 2018, Yeh et al. 2021). Besides, vanilla fruits reach their maximum length at the same time when the fertilization process is completed, and they only increase in weight until harvest (Swamy 1949, Parra-Quezada 1987, Vargas-Hernández et al. 2021, Yeh et al. 2021). In addition, the germination percentage of self-pollinated seeds in PL aligns with previously reported values in the literature (Menchaca-García 2018, Yeh et al. 2021), and higher values were obtained when pollen came from a different flower, supporting the idea that pollen source influences the production of viable seeds.

Light exposure also affects germination and seedling development, with better results obtained under a 16:8 light/dark photoperiod for both PL and PO, indicating a positive photoblastic response (Johnson et al. 2011, Nikabadi et al. 2014, Baczek-Kwinta 2022). Darkness exposition does not inhibit germination but limits seedling development. This is likely related to phytochrome activation (Chory et al. 1996), promotion gibberellin production (García-Martinez & Gil 2001), or a possible degradation of germination-inhibiting metabolites (Zhang et al. 2013). However, future studies should focus on analyzing these issues in detail.

This is the first study where the effect of different pollen sources in PL and PO on fruit and seed development is analyzed. It is considered that both PL and PO are partially self-incompatible species, so cross-pollination is recommended to obtain viable seeds and larger fruits. Metaxenia produced larger fruits in PL, whilst xenia resulted in larger seeds with the highest germination percentage in both species, so cross-pollination between PL and PO is also proposed as an immediate breeding strategy in vanilla. Hybrid organisms exhibited bigger fruits compared to those obtained in PL by traditional pollination, although their seeds did not germinate. Nevertheless, their potential use as an alternative to traditional vanilla cultivation is proposed.

Supplementary material

Supplemental data for this article can be accessed here: https://doi.org/10.17129/botsci.3679

Supplementary material.

Acknowledgements

We thank to local vanilla producer L. Mora-Domínguez and his environmental management unit “Vainillales Tlali Nantli” (SEMARNAT-UMA-IN-VIV-0281-VER/19), as well to M. Lozano and his experimental vanilla plantation, for donating plant material used on this research. We also thank to A. Nájera for taking the photos used in this article, and P. Flores for the illustration of the germination stages in Vanilla. Authors are grateful to the reviewers and the editor of section for their comments.

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Supporting agencies: This study was funded by research funding from CITRO and INECOL. JMBC (CVU 960142) thank to SECIHTI (Secretaría de Ciencia, Humanidades, Tecnología e Innovación) for his doctoral grant. JAGA (CVU 43039) thanks also SECIHTI for his fellowship grant (854285) during his sabbatical leave. RAMG and MALR thank to SADER (Secretaría de Agricultura y Desarrollo Rural) and FAO (Food and Agriculture Organization) for funding the Vanilla’s in vitro Germplasm of the Tropical Research Center of the Universidad Veracruzana, where seedlings are maintained.

Received: February 24, 2025; Accepted: April 29, 2025; Published: June 30, 2025

*Corresponding author: joseantonio.guerrero@inecol.mx; rmenchaca@uv.mx

Associate editor: Arturo de Nova

Author contributions: JMBC Conceptualization, Field work, Formal analysis, Writing, ERP Supervision, Writing, JLMV Supervision, Writing, MALR Conceptualization, Field work, JAGA Funding acquisition, Supervision, Writing, RAMG Funding acquisition, Supervision, Writing.

Conflicts of interest: The authors declare that there is no conflict of interest.

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